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by Terry Grossman (article published
on
KurzweilAI.net on May 29th, 2002)
Thanks to breakthroughs in genomics
testing, physicians now have tools for true preventive
medicine. Gene chips and genomics test panels can predict
one’s predisposition towards many serious -- and often
preventable -- genetic diseases and allow doctors to modify
gene expression through precise, targeted, individualized
interventions.
The monumental accomplishment of decoding
the human genome is nearly complete. The results of work of
the official government-sponsored Human Genome Project
together with the efforts of private firms such as Celera and
Human Genome Sciences has created a true inflection point in
the curve of medical history. The human genome, arguably The
Rosetta Stone of the human body, is presently undergoing
intense scrutiny by scientists in nearly every country in the
world. The potential benefits of these efforts for improving
human health and well-being are incalculable.
"The greatest payoff from understanding the human genome is
likely to be an illumination of the molecular pathogenesis of
disorders that are currently poorly understood and for which
treatments are …frequently sub-optimal….Genomics offers … the
greatest opportunity for development of targeted therapy since
the development of antibiotics,"1
according to Frank S. Collins, M.D., Ph.D. of the National
Human Genome Research Institute, National Institutes of
Health, Bethesda, Md.
Historically, previous medical disciplines have dealt largely
with the after-effects of an individual's genetic inheritance.
Genomics and these other new disciplines, on the other hand,
look directly at the genes themselves. They look at an
individual's genetically programmed biochemical pathways of
life under conditions of health and disease. For the first
time ever, physicians have the tools to help their patients
employ truly preventive medicine. Genomics may help scientists
find ways of modifying human biochemistry long before a
genetically predisposed disease has a chance to appear.2
Rifling through the dusty pages of medical history, however,
it seems axiomatic that our powers for diagnosing diseases has
preceded our ability to offer effective treatment for them.
This also seems true on the new genomics frontier as well.
Testing for genetic
diseases
Enter predictive genomics, the
identification of the genetic predisposition of individuals to
certain diseases, which is the diagnostic arm of the new
genetics-based paradigm. This field has already advanced to
the point that a number of sophisticated diagnostic tests are
currently available to help predict one's predisposition
towards many serious (although preventable or modifiable)
genetic diseases.
The fact that proteomics and other therapeutic modalities are
still in their infancy is in keeping with the historical
diagnostics-first-therapeutics-later tradition. Progress in
the sister specialties of proteomics, bioinformatics, and
systems biology should eventually provide ever more effective
therapeutic modalities for patients with these genetic
predispositions in the years ahead.
Roger Williams, M.D. in the 1950's, introduced the concept of
biochemical individuality: that every individual possesses a
specific and unique biochemical blueprint.3
Until a few years ago, however, discovering what constitutes
our biochemical individuality has been hit-and-miss at best,
the empiric result of decades of careful trial and error.
For example, after many years of observation, one person may
have noticed that he has more energy when eating protein for
breakfast, that eating strawberries gives him a rash, and that
he gets a headache if he consumes artificial sweeteners. Yet,
another person feels sluggish if he has too much protein for
breakfast, but seems to have no problems with strawberries or
artificial sweeteners. Truly, "One man's meat is another man's
poison," for we are all biochemically unique.
As a direct result of data from The Human Genome Project,
however, we have begun to obtain much more information
regarding our biochemical individuality in a rapid,
quantifiable and affordable fashion. The tools of modern
science can now accomplish in minutes what once took years of
trial and error. One company, Orchid Diagnostics, currently
offers products and services to help physicians and
laboratories perform HLA genotyping (to assist with matching
of donor transplant organs with recipients), disease
susceptibility testing and immunogenetics. Each of their
systems is capable of performing over 500,000 genotype
analyses per day.4
Genomics testing may soon be able to predict precisely what
foods are best for us, prescribe individualized exercise and
other lifestyle prescriptions, and recommend a personalized
list of supplements, neutraceuticals, and prescription drugs
for maximum health and disease avoidance. This will all be
based on an examination of our personal genetic makeup.
One often hears of life being compared to a game of cards. An
individual born with a serious genetic disease such as Cystic
Fibrosis or Huntington's Disease is thought of having been
dealt a "bad hand." Conversely, the 105-year old we read about
who attributes her longevity to "Eating a jelly donut for
breakfast and smoking two packs of cigarettes every day" would
clearly seem to have started life with exceptionally good
cards.
The Mendelian concept of "genetic determinism" - that the
genes with which we are born will determine our fate in an
absolute fashion - has given way to a newer hypothesis of
"genomic relativism." Genes don't determine what diseases we
will acquire, they merely predispose us to them. The
implications of this simple concept for the future of
healthcare and preventive medicine are far-reaching.
While there are a few genes that do condemn an individual to
an almost certain fate (such as the Cystic Fibrosis or
Huntington's Chorea genes mentioned above), these constitute
only a tiny fraction of the 35,000 or so genes that comprise
the entirety of the human genome. The overwhelming majority of
the time, our genes merely predispose us to disease conditions
that will either manifest or not later in life depending on
the lifestyle choices we made earlier on. We end up reaping
later in life what we ourselves sowed in our youth.
Continuing with our gaming analogy, the cards we are dealt
represent our genetic heritage. We call this sum total of our
genetic makeup, the totality of our inherited DNA, our
"genotype."
Our genetic heritage (our starting hand) expresses itself
throughout the course of our lifetimes as a consequence of the
environment in which we live and the lifestyle choices that we
make (how well we play). Like any good card game, it is this
combination of luck (genetic makeup) plus skill (lifestyle
choices and environmental factors) that makes for an exciting
outcome. This concept of genomic relativism is at once
enabling and terrifying. The age-old of battle of
predestination vs. free will is being fought on the front
lines of our nuclear DNA. And it is now looking like very
little about our future health is absolutely predestined or
predetermined.
Doctors now realize that almost all human diseases result from
the interaction of genetic susceptibility with modifiable
environmental factors. In the overwhelming majority of cases,
genetic variations do not cause disease; rather, they
influence a person's susceptibility to disease as a result of
lifestyle choices and environmental factors. It's not "nature"
vs. "nurture," but nature (genetic heritage) and nurture
(lifestyle/ environment).
Compared with looking at one's "genotype," it's more
compelling to watch how the genetic code is translated, i.e.,
the "phenotype" of one's genetic expression, particularly the
subtle differences between individuals. More than 99% of human
DNA is identical among all people. Yet, it is this fraction of
one percent that is different that creates all the variety of
life and ensures that no two humans (other than identical
twins who have precisely the same DNA) will be exactly alike.
This fraction of a percent difference in DNA from person to
person is of critical importance. In the course of replicating
itself billions and trillions of times, as it must do to
create all the cells and tissues of the body, our DNA
undergoes numerous opportunities for errors. These mistakes or
imperfections in our DNA most commonly take the form of what
are called point mutations, deletions or translocations. These
variations are collectively known as "polymorphisms"
(literally, multiple shapes). Our biochemical individuality
derives largely from these polymorphisms, 100,000 or so of
which have been found to date.
Specific genetic polymorphisms that involve only a single
nucleotide (DNA subunit -- cytosine, thymine, adenine, or
guanine) are the most common variant, and such "single
nucleotide polymorphisms" (SNPs, pronounced "snips") are
extremely common in the population at large. It is estimated
that 50% of people have at least one of the known SNPs.
By convention, rare single-nucleotide imperfections in the
genetic code are referred to as mutations. When a specific
mutation is so common that it affects more than 1% of the
population, it is called a polymorphism or SNP. These
polymorphisms are important because they can change the manner
in which the body functions, and, in some cases, predispose us
(or make us more resistant) to specific diseases.
Individualized healthcare
It is axiomatic of the new theory of genomic
relativism that just because we have a genetic variation that
predisposes us to a certain disease, say heart disease, breast
cancer, rheumatoid arthritis or osteoporosis, it does not mean
that we are predestined to get that disease some day. The
fundamental equation of predictive genomics is:
Genetic predisposition + environment + modifiable lifestyle
choices = phenotypic expression
Predictive genomics testing signals the beginning of truly
individualized healthcare. Physicians can now begin to
evaluate each patient's unique genetic predispositions and
then develop and implement a carefully targeted, customized
plan for intervention years before pre-disease imbalances or
disease symptoms begin to appear.
Almost all of the most common disabling and deadly
degenerative diseases of our time, including cardiovascular
disease, cancer, Alzheimer's Disease and adult-onset
diabetes,8 are thought to be the result of interaction between
genetic and environmental factors.
By evaluating possible genetic variants in a patient, we will
be able to:
-
Identify "hidden" gene mutations that may
promote chronic disease
-
Gain earlier advanced warning of disease
susceptibility in each patient
-
Determine cumulative risk associated with
specific, easily identified mutations
-
Intervene much earlier in the pre-disease
state
-
Modify gene expression through more precise,
targeted, individualized interventions
-
Identify key target areas on which to focus
follow-up
-
Monitor therapeutic effectiveness of
intervention strategies with laboratory testing"5
With clinical insight such as this, physicians will gain a
deeper understanding of disease processes and be able to
develop more rapid and efficacious interventions.
Predictive genomics attempts to identify the most significant
single nucleotide polymorphisms (SNPs) in individuals. This is
done to predict the likelihood that an individual is
predisposed to develop a particular chronic disease or
functional imbalance and evaluate the risk that this disease
or imbalance might appear under circumstances of particular
environmental or lifestyle choices.
Predictive genomics may make medical practice in the near
future radically different from the medicine of today. Just as
individuals will no longer be forced to play the poker game of
life blindfolded, neither will their doctors. Rather than
having to guess what lifestyle choices to make, individuals
may finally get to look at the owner's manual for their
particular bodies. Instead of relying on randomized studies
involving large patient populations, doctors will have access
to sophisticated diagnostic and therapeutic tools
individualized for each of their patients.
We may find such freedom enabling, but terrifying as well. The
scary part will be that individuals will be required to take
ever-greater personal responsibility for maintaining their own
health and longevity. The more powerful and dangerous the
genetic idiosyncrasies with which an individual is born, the
greater the responsibility on that individual to modify their
environment, diet and lifestyle to attenuate the expression of
that potentially harmful genetic material. As a result,
physicians will move laterally into positions as co-workers or
counselors with their patients, rather than as paternalistic
"medicine men" or even "healers" who possess and dispense
wondrous "cures."
The same SNP that can be harmful to an individual in one
environment can be beneficial to that same individual under
different circumstances. For example, a SNP that has
historically afforded individuals a better chance of survival
during periods of famine or near starvation may render those
persons significantly more prone to obesity under conditions
of excess or even adequate calories. The nearly ubiquitous
incidence of obesity among modern day Pima Indians is
testimony to the variegated expression of the same genetic
mutation under different environmental circumstances.6
The power of predictive genomics to alter medical practice and
allow physicians to practice true preventive medicine seems
awesome. However, despite the signs in the road warning of
"Wonders Ahead," I predict that only a small percentage of
patients who might be helped by predictive genomics testing
will take advantage of its availability within the next few
years.
The inherent conservatism of the medical community as well as
the intrinsic reluctance of the population at large to accept
dramatic changes in their worldview will force a delay in
popular implementation of this paradigm shift. Most physicians
and patients will be likely to continue wandering in the
barren but familiar landscape of the prehistoric genetic
desert for a number of years before arriving at The Promised
Land of Predictive Genomics.
The groups most likely to avail themselves more quickly of the
new diagnostic information emanating from Predictive Genomics
testing will include:
- Proactive patients who seek not merely good health, but
optimal health and want to bring their risks to an absolute
minimum.
- Patients who have a family history of potentially serious
diseases that are easily tested with current technologies,
such as heart disease, Alzheimer's, colon cancer,
osteoporosis, etc.
- Patients who have proven refractory to conventional
treatments.
I predict that this radical shift in medical diagnostics will
take several years to filter throughout the medical community
and enter common usage among the general populace. For
widespread acceptance to occur, physicians and patients alike
will be forced to take giant strides in their
conceptualizations of why we get sick. The very idea that
patients can be tested before the fact for the diseases to
which they are predisposed represents a very big first step.
Taking it to the next level and realizing that patients
themselves are largely responsible for their own fates may
take an even greater stretch of the imagination. It will
definitely represent a major paradigm shift in thinking for
patients and physicians alike. Such a drastic alteration in
our concept of health and disease--that we are each largely
responsible for our destiny--will make many folks very
uncomfortable indeed.
Testing panels
At this time (mid-2002), several genomics
testing panels are commercially available. Each of these
panels tests for a dozen or so SNPs at a cost of a few hundred
dollars per panel. Within a few years, thanks to the Law of
Accelerating Returns,7
for the same few hundreds of dollars, panels will be available
that test for thousands of genetic predispositions.
We will also soon have access to "DNA chips" that will test
for most, if not all, of the 100,000 or so SNPs currently
identified.8 9 One
company, Affymetrix, is currently making gene chips available
to doctors for analyzing our DNA and tracking gene expression
in tumors and other tissue they are sufficiently optimistic
about their prospects that their toll-free number is (800)
DNA-CHIP. Affymetrix and other companies have developed
silicon-coated glass wafers that can be subdivided into over
150,000 distinct locations, so we will be able to detect
polymorphisms on tens of thousands of genes in a matter of
minutes.
The road to these "DNA chips" may have a few hurdles to cross
first, at least before this information is available at low
cost. It seems that a few years ago, the overwhelming majority
of information found in DNA didn't seem to bear any
relationship to the genes themselves and came to be known as
"junk DNA." Researchers have since learned that these
"non-coding" regions of the DNA are not "junk" at all, but
contain vital information. Many SNPs, in fact, are found in
these non-coding DNA segments.10
A small Australian biotech company called Genetic Technologies
of Melbourne was among the first to realize that SNPs found
outside of the genes themselves may be just as important as
genetic polymorphisms themselves and registered a number of
patents in the 1990's relating to this discovery. Genetic
Technologies currently seems dedicated to cashing in on these
patents and has threatened to sue companies who try to use
this information without first paying large royalties.11
Without discussing the legality or morality of such
operations, genomic testing could easily end up be much more
costly as a result of these and similar patents and lawsuits.
With our current knowledge and abilities, however, even if the
massive amounts of data that could be found on DNA chips were
available, it would likely produce little beyond information
overload. We need to wait for the bioinformatics scientists to
catch up.
At the present time, because of both the cost considerations
and our limited abilities to make meaningful sense of the
data, today's clinicians need to apply limiting criteria to
determine which polymorphisms it makes most sense to screen.
In so doing, we can establish which SNPs should be included as
part of a comprehensive preventive health program that
incorporates predictive genomic testing. Presently, the
numbers seem quite manageable.
Of the 100,000 SNPs currently identified, only 8,000 seem
relevant to health. These 8,000 polymorphisms are relevant
because they exert a significant effect on our biochemistry
and physiology. Frankly, we don't know what the other 92,000
do … at least not yet.
Given our current knowledge of the human genome, only
polymorphisms that exist in a significant percentage of the
population are likely to be identified and evaluated in a
cost-effective manner. Polymorphisms of sufficient prevalence
among the population at large slice the pool down to about 300
SNPs.
It seems both prudent and ethical to test primarily for
polymorphisms whose effects are modifiable through the use of
currently available interventions. Finding out that a patient
has a genetic defect that cannot be modified by any presently
available therapy may create as much anxiety as good (although
patients should have the right to know if they wish). About
100 SNPs are currently modifiable through interventions such
as diet, lifestyle, nutritional supplements, and prescription
pharmaceuticals.
In an ideal situation, the effects of our interventions should
be easily measurable through presently available functional
laboratory testing. In the year 2002, this brings the total of
relevant, prevalent, modifiable and measurable genetic
polymorphisms down to the easily manageable number of a few
dozen or so.
Genomic test panels
The more common of these single nucleotide
polymorphisms have been assembled into genomic test panels.
Currently, four predictive genomic panels are commercially
available for physician use:12
a cardiac risk panel, an osteoporosis risk panel, an immune
function panel and a detoxification panel.
The Cardiovascular Risk Panel identifies genetic
single nucleotide polymorphisms associated with increased risk
of developing coronary artery disease, other vascular
diseases, Alzheimer's Disease, and hypertension. Risk factors
measured include markers for inflammation, folic acid defects,
iron storage problems, blood coagulation abnormalities, and
cholesterol regulation defects, as well as cardio-protective
markers. The information from such profiling will provide the
ability to predict heart disease decades before symptoms
appear.13
The Osteoporosis Risk Panel identifies SNPs
associated with increased risk of developing bone loss. Risk
factors include defects in calcium and vitamin D metabolism,
parathyroid hormone action, abnormal collagen synthesis, and
chronic inflammation.
The Immune Panel identifies SNPs associated with
increased risk of developing immune dysfunction. Risk factors
include altered production and activity of cytokines such as
interleukins and Tissue Necrosis Factor-alpha (TNF-a) that may
lead to inflammation and altered immunity. These SNPs have
been associated with increased risk of asthma, rheumatoid
arthritis, some types of cancers and other diseases.
The Detoxification Panel identifies SNPs
associated with increased risk of developing detoxification
defects, especially with increased exposure to environmental
and other toxins. Risk factors include altered liver
detoxification processes, including defects in glutathione
conjugation (the detoxifier molecule mentioned in the sidebar
below). Defects in the body's detoxification pathways have
been associated with increased risk for certain cancers,
chronic fatigue, multiple chemical sensitivity, and
alcoholism.
Some patients may feel it worthwhile to screen with all four
panels, while others may prefer to pick and choose one or more
of the panels they feel are most relevant to them.
The testing procedure itself is very simple. Cells are
collected either by using a mouth rinse solution collected at
the patient's home or from a simple blood draw in the
physician's office.
Many patients are understandably concerned about the
confidentiality of their genomics testing results.
Manufacturers of the genomics test panels have made the sage
decision to address these issues before problems occur and
have concluded that genomics test results require a higher
level of security and confidentiality than other test results.
At the testing facility, genomics testing results are
protected by a security code that is disclosed only to the
patient's attending physician.14
It would be tragic for genomics test results to be used by
agencies such as insurance companies and HMOs to discriminate
unfairly against individuals who have been proactive in
seeking to achieve better health. So in most medical offices,
copies of genomics test results are not included with the
patient's regular medical records, but are kept in a separate
secure location. This is done to ensure that such information
is not routinely available to insurance companies who do not
yet have sufficient experience with genomics testing to
understand the full implications of these results.
* * *
Just as I was preparing to
finish this article (in fact, I had only these concluding
paragraphs to complete), I got the results of my own genomics
profile back from the lab. As is often the case where hopes
and dreams in life collide with reality, the outcome of my
tests was less ideal than I had hoped, but not as bad as I had
feared. I found out that I am among the 30% of the population
who carries the Apo E4 gene. While I haven't lost sleep over
this information, I have found these results disturbing. This
information has introduced a light chop onto the calm waters
of my inner tranquility.
Luckily, though, I have the more common and less risky E3/E4
genotype, not the distinctly more malevolent E4/E4. Yet, I now
live with the knowledge that my chances of developing
Alzheimer's Disease at some point in my life are 2-3 times
average. From a purely statistical point of view, the chance
that a man my age with the E3/E4 genotype will develop AD
within the next 30 years is 14%.
All things considered, I am still glad I took this test. I
found I had other genetic risk factors as well. Now knowing
precisely what some of these risks are has stimulated me to be
even more vigilant in my health maintenance efforts. To help
reduce my chance of developing Alzheimer's Disease and some
other diseases for which I find I am at above average risk, I
plan to reduce my consumption of saturated fat significantly.
I plan to eat more fish. I will also make some modifications
to the nutritional supplements I take.
But, knowing that all of the genetic risks that have been
identified for me are just that -- risks and not diseases --
gives me hope, and also tools to keep some of these dreaded
maladies at bay. So, I am very glad that I took this test.
Predictive Genomics testing is here and it is available today.
It can provide previously unknowable genetic information
personalized to each individual. For additional information on
specific single nucleotide polymorphisms (SNPs), see the site
run by The National
Center for Biotechnology Information. Another excellent
resource is Office of
Genomics and Disease Prevention of The Center for Disease
Control (CDC).
For further information about
Predictive Genomics, please see the website for the genomics
division of Great
Smokies Diagnostic Laboratory.16
Genetic engineering
disciplines
As a direct outgrowth of the Human Genome
Project, a number of new scientific disciplines have been
created to help interpret and capitalize on the voluminous
amounts of data that is being generated each day.
-
Genomics is the study of the
composition of genetic material itself (the DNA in our genes
and chromosomes)
-
Proteomics is the study of proteins,
both those found naturally in the body and those created in
the laboratory. Given the capitalist imperative, in the
private sector at least, there is a bias in this field towards
the production of proprietary protein molecules that may have
value in helping maintain optimal health as well as treating
disease
-
Bioinformatics is the new discipline
assigned the task of developing techniques to gather and
process all of this new information
-
Systems Biology is the study of how
all of these systems work together to form the inordinately
complex, ineffably elegant, and indescribably beautiful entity
we call life
--------------------------------------------------------------------------------
Genomics
testing for cardiovascular conditions
I want to offer one practical
example of the type of information available through genomics
testing. We will examine one specific marker that is part of
the Cardiovascular Genomics Profile -- the apolipoprotein E (Apo
E) polymorphisms. We will first discuss the specific risks and
benefits associated with the different Apo E polymorphisms.
Then, we will discuss how this information can result in
lifestyle recommendations, which can help an individual modify
the phenotypic expression of the more dangerous genotypes.
Apolipoproteins are carrier proteins responsible for the
transport of lipids such as fat and cholesterol throughout the
bloodstream. Since fat and cholesterol are oily substances
that are not water-soluble, they require specific carrier
molecules to help move them from place to place in the body.
One important lipid carrier protein, Apolipoprotein E, comes
in three main polymorphic flavors -- Apo E2, Apo E3 and Apo
E4. These three lipoproteins differ in the amino acids found
at locations 112 and 158. Apo E2 has the amino acid cysteine
at each of these loci, while Apo E4 substitutes arginine in
each location. The most common type, Apo E3, has one of each,
cysteine at site 112 and arginine at site 158.17 These subtle
differences produce significant variations in how Apo E
performs its duties of pick up and delivery of lipid bundles.
One isoform, Apo E2, performs its job of clearing cholesterol
from the arteries quite well, while Apo E4 is much less
efficient.
Every person possesses two copies of the Apo E gene, one
inherited from each parent. There are, thus, six possible
combinations: E2/E2, E3/E3, E4/E4, E2/E3, E2/E4 and E3/E4.
It is known that individuals who possess one or two copies of
the E4 polymorphism have an increased incidence of elevated
cholesterol, triglycerides and coronary heart disease.18 Of
even greater clinical significance, however, is the
correlation between the presence of Apo E4 and the incidence
of Alzheimer's Disease (AD). The effect of this polymorphism
on AD is actually quite dramatic.
Individuals who do not have any copies of the Apo E4 allele
have only a 9% risk of developing AD by age 85. People with
one copy of the gene (the E3/E4 genotype carried by over 25%
of the population) have a 27% chance that they will develop AD
by the same age. For individuals who possess two copies
(E4/E4), the risk of developing Alzheimer's increases to 55%
by the age of 80.19
Furthermore, the age at which dementia is diagnosed is much
younger, depending on the number of copies of Apo E4 carried:
84 years old if one has no copies of E4, 75 years if one copy
and a mean age of 68 years in E4/E4 homozygotes.20
Pathological examination of brain tissue of Alzheimer's
patients reveals three main types of abnormalities:
extracellular amyloid plaques, intracellular neurofibrillary
tangles, and vascular amyloid deposits. It is probably no
coincidence that Apo E4 has been immunochemically linked to
each of these types of deposits.
The Apo E2 gene, on the other hand, appears to confer some
degree of protection against development of AD, and patients
with at least one copy of the E2 allele have a 40-50%
reduction in their Alzheimer's risk.21 Apo E2 is not perfect,
however, as some forms of heart disease are more common in
patients with this polymorphism. All things considered, Apo E2
is a pretty good deal, however, and it is not unlikely that
our 105 year-old smoker mentioned above was born with one or
two copies of Apo E2. The Apo E3 form is the most common, by
far, (over 50% of the population is E3/E3) and affords some
protection against both heart disease and Alzheimer's.
In a large study of 12,709 male twins who were 62-73 years
old, the odds of developing AD was 17.7 for genotype E4/E4
versus E3/E3 (i.e., an almost 18-fold increased risk) and 13.8
for E4/E4 versus all remaining genotypes. By contrast, the
odds ratio for heterozygous E3/E4 was only 2.76 versus E3/E3
and 2.01 versus all other genotypes.22
Although the Apo E4 allele is a potent risk factor for AD and
may be associated with other forms of dementia, the good news
is that most people who carry the Apo E4 gene still do not
develop dementia, and about one-half of people diagnosed with
AD do not possess any copies of the Apo E4 gene.23 In some
studies, it has been reported that the proportion of patients
with dementia that is attributable to the Apo E4 allele is
estimated to be only 20%.24
Free radical damage appears to play a key role in the creation
of insoluble beta-amyloid, one of the hallmarks of AD
pathophysiology. Therefore, particularly for individuals who
discover they carry the Apo E4 gene, special efforts to limit
free radical damage seem prudent.25 Patients who have been
identified as Apo E4 carriers would be advised to begin taking
aggressive free radical damage control measures, i.e.,
anti-oxidant and other therapies, as early in life as
possible.
The following practical recommendations are suggested for
patients carrying the Apo E4 genotype (although they could
also be of value for anyone):
-
Vitamin and herbal agents
which directly interact with free radicals such as vitamin C,
vitamin E, alpha lipoic acid and coenzyme Q 10 should be taken
daily.
-
Pharmacological agents
that may help reduce free radical production in the brain
include the monoamine oxidase-B inhibitor, selegilene,26 and
the hormones, melatonin and estrogen (women only). Low-dose
aspirin therapy (81 mg daily) may be prudent as well.27 For
patients unable to lower their lipid levels despite dietary
strategies, the nutrient policosanol is of value. For patients
who still require a prescription drug, lorelco (available
through compounding pharmacies) seems to work better than
other cholesterol lowering agents, although some specific
precautions must be followed when this medicationis used.
-
Neutraceutical agents
such as phosphatidylserine in fairly large doses - such as 300
mg/day taken on a long-term basis - has been shown to slow
cognitive decline in Alzheimer's dementias.28 Acetyl-l-carnitine
seems to have value as well.
-
Lifestyle changes including
stress management and regular aerobic exercise have been found
to be of value in preventing the incidence of AD.
29,30
-
Dietary modifications are warranted
since we recall that Apo
E4 is also associated with elevated lipid levels. Suggestions
include an aggressive low-fat diet to help keep cholesterol
levels down, while lowering simple carbohydrates in the diet
(such as sugars and refined flour products) is often of
benefit to individuals with high triglycerides.
1 Collins, FS, Guttmacher AE. Genetics moves
into the medical mainstream. JAMA. 2001 Nov 14;286(18):2322-4
2 Flower J, Dreifus LS, Bove AA, Weintraub WS.
Technological Advances and the Next 50 Years of Cardiology. J
Amer Coll Cardiol, 35:(4):1082-1091.
3 Williams, Roger J. Biochemical Individuality :
The Basis for the Genetotrophic Concept. New York: Keats,
1998.
4
http://www.orchid.com/products/lsg/products/uht.asp
5
http://www.genovations.com/overview.html
6 Coleman DL. Diabetes and obesity: thrifty
mutants? Nutr Rev 1978 May;36(5):129-32.
7 Kurzweil, Ray. The Age of Spiritual Machines. New
York: Viking, 1999, p.30.
8 Francis Collins, American College of Cardiology
Annual Scientific Session, New Orleans, March 1999.
9 Wu, Corinna. "The Incredible Shrinking
Laboratory," Science News, 15 (8/15/98): 154, pp 104.
10 Roth FP, Hughes JD, Estep PW, Church GM. Finding
DNA regulatory motifs within unaligned noncoding sequences
clustered by whole-genome mRNA quantitation Nature
Biotechnology 1998; 16: 939-45.
11
http://www.newscientist.com/news/print.jsp?id=ns99992280
12 These tests are available through Great Smokies
Diagnostics Laboratory www.gsdl.com.
13 "Genomic Medicine and Novel Molecular Therapies
in Cardiovascular Medicine," Victor Dzau, Bishop Lecture,
American College of Cardiology Annual Scientific Session, New
Orleans, March 1999.
14
http://www.genovations.com/patient_privacy.html
15 Bickeboller H, et al. Apolipoprotein E and
Alzheimer disease: genotype-specific risks by age and sex.
Am J Hum Genet 1997 Feb;60(2):439-46.
16 Additional contact information for Great Smokies
Diagnostic Laboratory/Genovations™ is 63 Zillicoa Street;
Asheville, NC 28801 Ph: 1-800-522-4762 (8AM - 8PM EST) ; Fax:
1-828-252-9303 ; e-mail: cs@gsdl.com.
17 This is an oversimplification. For all of the
many Apo E amino acid substations possible, please visit the
National Library of Medicine website:
http://www.ncbi.nlm.nih.gov/htbin-post/Omim/dispmim?107741#MAPPING
18 Eto M, et al. Familial hypercholesterolemia and
apolipoprotein E4. Atherosclerosis 1988 Aug;
72(2-3):123-8.
19 Myers RH, Schaefer EJ, Wilson PW, D'Agostino R,
Ordovas JM, Espino A, Au R, White RF, Knoefel JE, Cobb JL,
McNulty KA, Beiser A, Wolf PA. Apolipoprotein E epsilon4
association with dementia in a population-based study: The
Framingham study. Neurology 1996 Mar;46(3):673-7
20 Kamboh MI. Apolipoprotein E polymorphism and
susceptibility to Alzheimer's disease. Hum Biol 1995
Apr; 67(2):195-215.
21 Farrer LA, Cupples LA, Haines JL, Hyman B,
Kukull WA, Mayeux R, Myers RH, Pericak-Vance MA, Risch N, van
Duijn CM. Effects of age, sex, and ethnicity on the
association between apolipoprotein E genotype and Alzheimer
disease. A meta-analysis. APOE and Alzheimer Disease Meta
Analysis Consortium. JAMA 1997 Oct
22-29;278(16):1349-56
22 Breitner JC, Jarvik GP, Plassman BL, Saunders
AM, Welsh KA. Risk of Alzheimer disease with the epsilon4
allele for apolipoprotein E in a population-based study of men
aged 62-73 years. Alzheimer Dis Assoc Disord 1998
Mar;12(1):40-4.
23 Myers RH, Schaefer EJ, Wilson PW, D'Agostino R,
Ordovas JM, Espino A, Au R, White RF, Knoefel JE, Cobb JL,
McNulty KA, Beiser A, Wolf PA. Apolipoprotein E epsilon4
association with dementia in a population-based study: The
Framingham study. Neurology 1996 Mar;46(3):673-7.
24 Slooter AJ, Cruts M, Kalmijn S, Hofman A,
Breteler MM, Van Broeckhoven
C, van Duijn CM. Risk estimates of dementia by
apolipoprotein E
genotypes from a population-based incidence study: the
Rotterdam Study. Arch Neurol 1998 Jul;55(7):964-8.
25 Retz W et al. Free radicals in Alzheimer's
disease. J Neural Transm Suppl 1998;54:221-36.
26 Rosler M, et al. Free radicals in Alzheimer's
dementia: currently available therapeutic strategies. J
Neural Transm Suppl 1998;54:211-9.
27 Pasinetti GM. Cyclooxygenase and inflammation in
Alzheimer's disease:
experimental approaches and clinical interventions. J
Neurosci Res 1998 Oct 1;54(1):1-6.
28 Engel RR, et al. Double-blind cross-over study
of phosphatidylserine vs. placebo in patients with and without
apolipoprotein E4. Atherosclerosis. 1990
Sep;84(1):49-53.
with early dementia of the Alzheimer type. Eur
Neuropsychopharmacol 1992 Jun;2(2):149-55
29 Khalsa, Dharma Singh and Stauth, C. Brain
Longevity. New York: Warner Books, 1997.
30 Fletcher GF.The antiatherosclerotic effect of
exercise and development of an exercise prescription.
Cardiology Clinics 1996; 14 (1): 85-95.
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